Scaffold Ga0151516_10044

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151516_10044

Scaffold Ga0151516_10044

Overview

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10044 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	63081
Total Scaffold Genes	89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	74 (83.15%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005234	Metagenome / Metatranscriptome	407	Y
F027821	Metagenome	193	Y
F096879	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1004429	F027821	GGTGG	MTIDNNTGKDKEFYELGKKMFDRIKPLKPIKPYVDTIEEDIELMWKVNSADIEALEDAKMTLTVLREVEAGVHDEIIDESLALINKALGMSYSDAMERVMDRARGKV*
Ga0151516_1004430	F096879	AGGAG	MNEADKQYMERKQKDWEYDEPEPSDYAQFVQQVKGLIVWVIFVVGASILVAVVLK*
Ga0151516_1004458	F005234	AGGAG	MMQTDVKSGAAAAGATTTIFAGPARIKGISISYSTGATVVLNDGTSGTAMFSFTAPAAAGSIYMVFPGEGIKCSTNISAVVSATTTAVVFYG*

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