Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10056 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10056 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	58158
Total Scaffold Genes	99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (77.78%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

58158

Total Scaffold Genes

99 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

77 (77.78%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F024770	Metagenome / Metatranscriptome	204	Y
F036203	Metagenome	170	Y
F042324	Metagenome / Metatranscriptome	158	Y
F043922	Metagenome	155	Y
F053995	Metagenome / Metatranscriptome	140	N
F054812	Metagenome / Metatranscriptome	139	Y
F056549	Metagenome	137	Y
F058789	Metagenome / Metatranscriptome	134	N
F072277	Metagenome	121	Y
F105048	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1005610	F056549	GGAG	VAEPYVPIADYTTYNNLLIELEVTTDSAETNADALDLAVDNALVHKQTAENAVASKFDLFFLVGA*
Ga0151516_1005620	F008607	AGGA	MDAIYPKVAEFMTDSVVFTPKASVDKYNKPTFGASNTNVTVTGRLIYDTVKSKDVQGVEVVDIGRFITYGPATSITVGHRMVVGADTFTINAVDNIADENGAHHTVIRFGR*
Ga0151516_1005623	F036203	GAG	MAETQQRMSSSDAGNATGSSSKAQPARGVSDAPAVNLKINQVDLFKDLDSLVGRGRQQEGCSIGKMVKQLDEPLRNKLNEIFCNSTVDSSQLAQVMIAYGLAVSSSDVLRRHRRRLMGKEGCKCPIDNLVVPLK*
Ga0151516_1005634	F006261	AGG	MATISSAYTTSEPILIDNPAYWSFTAPESPTIKVNNIIVEQPLNQNIVESYGVFKPLGASKSVVISQSIYGVDGTYQITVQGETAWDALYPVLTYQGTLHVHDPLGRQKYVRFVDRSWTESGNINNLIRVVKVTYYEVDAP*
Ga0151516_100566	F053995	AGGAG	MALVNRLSKGEVAVGALQVGDNDTVYGIEFGTVSIDPASINATTRGGTTFTLTGAATTDIIIVNPPSDLNDDLIYCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA*
Ga0151516_1005666	F054812	GGAG	MNEQEVNKKFDDLVQPKIIQQVIKQKREPAKFPELRYLWGIALLGSFVLIVISAVVTTVLEAL*
Ga0151516_1005677	F072277	AGGAGG	MKKCVACGAFMQEFEVFEKGICVKCYAEEFEKEFQSALKVARLK*
Ga0151516_100568	F024770	AGGAG	MAVSHQRVSVGTTATQLTSDADGRDGQTISIQVPSAGATVYLGGAGVTTTSYGYELLGGTSFSVELQQGEKVFGVVASSTQTVNVFRQGA*
Ga0151516_1005684	F105048	GGA	MRLLSRLTLKQPLRVSEGSLRAIRRAQLEKALAEEADKRRARKKARMFSLISKPQ*
Ga0151516_1005689	F058789	N/A	MGLPEFVNDAPCRSADPWLFDQHQIDLAQPALSYCSRCKFWKECDSLVQPQTNHYDGIVAGKVWRNGRILAKLDAYSPNRLVVGEESIEENNYAVEIRGSELLGNRDELLLPE*
Ga0151516_1005691	F042324	AGGGGG	MAIWVDFFTEKLQGSKVVVDSNGKPYISKEIAPKEYVEIELNISQQFLPYHIYFRRYDANGNELENRLFAQVGDRDLALKSFNDLTSKRINSFELVLDGE*
Ga0151516_1005696	F043922	N/A	MNRRETQKAIQEAYAKWSEKVEFTSETGASDKDESEIMAQISTILQGNKPQSE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10056

Overview

Ecosystem & Geography

Associated Families

Sequences