Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10128 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10128 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	40843
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (84.06%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

40843

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (84.06%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F018164	Metagenome / Metatranscriptome	236	Y
F018698	Metagenome / Metatranscriptome	233	Y
F020883	Metagenome	221	Y
F042747	Metagenome / Metatranscriptome	157	Y
F053803	Metagenome	140	N
F055673	Metagenome / Metatranscriptome	138	Y
F064418	Metagenome / Metatranscriptome	128	N
F078625	Metagenome / Metatranscriptome	116	Y
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1012810	F020883	AGGAG	MEASFMITQVETTLSNYTNYYRRLGMQDLAIWQSLEDIYKRPELHDLTLASTREEAFDQMVKDNWFVDMGSHYYGLDYETIDELVLEYLKDNQLVKELVND*
Ga0151516_1012818	F064418	AGAAGG	MMGKPRPTEIKLVAKLLDPDAENSEGAAELAVEIIEALDKSRTKRESFVVVAKLADWVPVQAWGEFSTRLQAEKFFPNLSSPDKGGKGSIVRLENPDDLLKRIGVIK*
Ga0151516_1012827	F095175	GGA	MTTIIGIQKNDHCIIAADSRTTTEKGRPYSHPIITKITKRGKYLIAGAGTTMPCDTIQHIWKPPALPPSTKDQYHFMITDIVPSMRECLKENGWVADDKSEDYEFLFLIAVNGIIYEIDDTFSVFLRDDGVYGIGSGSSYAVGAVQQGATWRKALQIAAKNDVYTAPPFIMHRQEKK*
Ga0151516_1012832	F053803	AGGA	MAVIELTEDEIMDSLRFIHRVRKNKKEFDVTDRKFDKNNSSYSVNLMGRLGEVACARLLGLPTDDTVTPSGDNGHDLQTILGRSIQVKTSTLPQLIFNAPELFVSDLAVLVKFSGDKQLPHVDSLFDVIGWTTRENFLANHYLHDYGYGTRLVMDANQLQPIEVLVNEISRLH*
Ga0151516_1012841	F000368	AGGAG	MNAKLQAAVLSWFRAAASAAVALYLTGITDPKTLGSAALAGFLGPVLKWLDPSATEFGRGSE*
Ga0151516_1012847	F018164	AGG	MTKIFRGPTYRYKLGRPNDLWFVSYPIGKSVIKNNGTWSTVIVPKDSDLSTYQRVLRGGYDNVITDAEAAELTAAGYGEYIWDE*
Ga0151516_1012853	F018698	GGAG	MAEYTEYDFEDDSSDYGTDLVKKLRKQVDLLSKELKERDQVIQEFQTYSHEASVGEILESFGLNPKIAQFIPSDIEADEDAVSEWLTEYGDAFGITAVDESESGYEPDADAQSFEQISDFENGDIDPSIGQDISSLIANATSPEELTSFLKR*
Ga0151516_1012858	F055673	N/A	MKIFKKFEENLEYLGFELAPVAWDLARFEFESDDDRYALLEELTAEREINPNGNMG*
Ga0151516_1012861	F078625	AGGAG	MIGKQGKSAKANVGKPIMGKKPAGAAKGGGMVKFGITPKGVKGNKAKIK*
Ga0151516_101287	F042747	AGGAGG	MMGYKYEDIQAFGAALSRAQEYVPALDTKTTAGLVNIWDFFEGLLAEGYVEGWEAD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10128

Overview

Ecosystem & Geography

Associated Families

Sequences