Basic Information | |
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Taxon OID | 3300011116 Open in IMG/M |
Scaffold ID | Ga0151516_10184 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 35316 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (86.54%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000821 | Metagenome / Metatranscriptome | 876 | Y |
F001477 | Metagenome / Metatranscriptome | 687 | Y |
F003784 | Metagenome | 468 | Y |
F003863 | Metagenome | 464 | Y |
F006653 | Metagenome / Metatranscriptome | 367 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151516_1018419 | F000821 | GGAG | MNKEYLAAKANLCLDQAKIDLEQEEIARAIANLKRANSALSQLFGFKEEADE* |
Ga0151516_1018421 | F001477 | GAGG | MRETDIVWVGVGRRVMSNIYTIHPPKSELINFYEIVEPDGGNTWGGEHAESAIQWLSLAPAGSRILVSAWDSDEEDAHLVGQSIDITELIQHARKAGL* |
Ga0151516_1018422 | F003863 | GGAGG | MTESKQVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSITGNTRLTITTHTRANAVPDVAGRTDYESSDEGDDGGEA* |
Ga0151516_1018430 | F003784 | GGA | MYDDDAERVGHNATNFAAYGLSDLASTLRKPDPIDKTPASTPLADHPAVAGYRKIGVSTENLTSFIESFASLRAMRVKGVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQYTIDQVLPDCE* |
Ga0151516_1018435 | F006653 | AGGAGG | MSEGQLSNKYRDNLKTDELRADVDALKVDLTNFVGALLQSGIVELVKDEEGNVVYKINKVVLVDESVQQD* |
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