NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10262

Scaffold Ga0151516_10262


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10262 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)29636
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (76.60%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003784Metagenome468Y
F037608Metagenome / Metatranscriptome167Y
F075840Metagenome / Metatranscriptome118Y
F083438Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1026217F003784GGAMAADDTDFAYYGLPHLGNQRRERDTADMSNRNPLVDHLAVVGYRAGGVSTDDLTSFIESFASLRASRVRGVGADQYAIAQGQKFESFTTSDTIKELIEELADASNYIDFLAIKLLNLQHTIDLVLPDCD*
Ga0151516_1026222F037608GGAGMSNVISFHPPKSSLILLYEVVDERGNAEWGGNSEREALAWIARSSTAKRILVSGWESDDEDAQLVGQPLDITTIVREASR*
Ga0151516_102624F075840AGGAGMKFNKKVLDMWAKWFVSNALTAVVIIGKSPLEFSSADWKHAANALWLALVPVVIAWANPKNELTMTVKK*
Ga0151516_1026240F083438AGGGGGMNKGSQAPAPMSKPIHGASGAGAKVTGGDVKQPFAGAAKPGKKVKK*
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