Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10279 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10279 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	28505
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (36.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28505

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (36.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F022193	Metagenome	215	N
F023838	Metagenome	208	N
F034162	Metagenome	175	Y
F042314	Metagenome	158	N
F057334	Metagenome / Metatranscriptome	136	N
F105021	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1027912	F105021	N/A	MNTLNKLLARWGYEISKTDKVATKSELQLAYAALESERNELRAQKKELLRKLAARTAGEWYWRKQAKEARK*
Ga0151516_1027918	F034162	N/A	MRWVDATFRLPVAANMPVEVELAGGGTERRDTVTGDWRAVVRWRTVVDSEPKPRKKKA*
Ga0151516_102792	F057334	N/A	MCVMVTKRAVDEWLIEPDVEGAREYARLSIYAEPEGLNIDGQGLIPWAQIESSRLTYTVHMKKRHAAR*
Ga0151516_1027921	F022193	N/A	MTHTDTLDQHVREYYLYHDEQTKFFDDLASANKPVDAGIDEFIALQQMERLHEETGTWNADVWAEKGWW*
Ga0151516_1027929	F042314	N/A	MTHTQSGQEAKDAGCALVLEHTPERWVADFEQQAAALLKTNGSFTAEEVVTLIGQPPNHSNAIGAACRQFVKRNGLTGSYEPARSPSAHGRIITRWSMTTF*
Ga0151516_102793	F012017	N/A	MAQKRILIGTPLKGDIPKSYFRTSLQMATAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAMRNGEDMTAAALMRLIGHDRDIVTAVYSSRSLETHWHVHPIKGEEPDESGLQRVERASIGFCKIKVPVFKKIAWSNIDRAAMLVDPNKAPKLVPELFPMELRGRNTPLYRLQQIWAALSEVKNDEALRARIERELTIRYDEPNSYISEDFGFCDLARAAGYDIWMDTLMVLGHQASVTVPIESGKLLEMLSEPWRKEELAIIKQQMLEAQAAKKK*
Ga0151516_1027930	F023838	GAG	MFTSQRLLVLFSSALCLAGLPVTSHGATIDLDRLIRCLEAREGARWASPGGALQFTKATWSEFSTDPYLRASQPDKARQIARKALFLTLQRMERDGIRPSVWLLALRWNCGYEGMKRRMGEPWSYAAHVHNLYYDNDFR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10279

Overview

Ecosystem & Geography

Associated Families

Sequences