Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10405 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10405 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	21171
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (77.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

21171

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (77.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037622	Metagenome	167	N
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F065530	Metagenome / Metatranscriptome	127	Y
F082352	Metagenome	113	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1040512	F102824	AGG	MTPVRVQPEEGKWRVTTMAGNPIGPRLWGAEPPNGLPPIEDLFDDKGKAQDAADLWNAYAMWCKDRSGKRKRR*
Ga0151516_1040513	F091592	GGA	MISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKMAGVRIDQATLNRVIKKGLGNVN*
Ga0151516_1040514	F057984	GGA	MRNNRVNDRVSGRLSILACGKGDKRKIKMDGLGQIKILAERKVKMVELDIEVDDKTRDIVCHAALHEITSDGDALFNYGFNQALKRFIQTKGKKCTKKSSNKKSSRR*
Ga0151516_1040517	F098923	GAG	MFYHEEIDRRHIEALKEILETTEVDPGRLMNLNLGPFASVMNQMLYDKFHGHGWKLDLLTGRFVKTEGE*
Ga0151516_1040528	F037622	AGGA	MTKEQILKEYFSAMGRKGGSVTGPTKARKLSREHYQTVAQAQRERWDKWRAENGRVAIKRER*
Ga0151516_1040532	F082352	AGGA	MKTPADCGDLKVIFRYDDPKFFVGYWDCSTWNGWDCVRVDKETFEAIRDWAKEDGDADLSEYDEAEADEFGLYSLDGHCSQVCGFTHRGIFVTNPFESDCGRFAVDPLEHYGLSHDDLVGIFGENYKSLKS*
Ga0151516_1040537	F065530	N/A	VIGAILQIIASVLRLIPGWREKRIDKIEGEWRNNHQAIDDDLGPKPWWVRYNDTVHEDKRSRDGSDAR*
Ga0151516_104057	F039994	GGA	MENPPTISEMGDAASEIVWRVMGNGSAKSAYGEWFWKDRPVYDYHITRCIKHAVTAQQQIHLNHPCPDESGENALDHLERAVVRALFAWMQLKKGLPRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10405

Overview

Ecosystem & Geography

Associated Families

Sequences