Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10713 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10713 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15329
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (60.87%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15329

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (60.87%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F012447	Metagenome	280	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1071314	F012447	GAG	MAKAISLIPVDKDYKGLLRAFGKMDDIAKNDMKKIAQDLAERGAAYAQGSASRAPYNPKQAMAVAESIKVSKSDKAPSFSIGGRGKVGSSAFSAGYVIMGSEFGSKQYKQFPKRSPSQGRGNRGWWLYPAMSRFQPTIAREWLAGYEKVRDAWAGRI*
Ga0151516_1071315	F008616	AGG	MLKLKIRWELETGEVYEEWTRPNELAQAEKELYNNRSIIKILTEESSPSNQLLLFLGHKIQQRVTKKMENFDTWKSTITDIAAVDFETANFTKPDQSGA*
Ga0151516_1071316	F008811	AGG	MATTILSGRQLTLTIATKNYSEQILSSAINFATERLTFDTLAGKAFKYIDSNVTLDLTFLNDAGKSPDSLYKALWDATETAPDTALAFVLTLQTGVTLTGTVLPQYPGVSASGADAQQCSVSLQVVGIPTEDLTA*
Ga0151516_107132	F011755	GAG	MSNAIYLHYHYDYDNSKQILCRDAKCYQKRLEDRKKLEEYQDQIDRDLQMKDNLQYVEDMIQDPRIDNYNDY*
Ga0151516_107136	F014609	N/A	MINELIGITGLLITVLVLVIKATAEISKMKSQLFPNGGSSLNDKVTRLQIEVSKISTTISSIESQLGKPKRKTR*
Ga0151516_107137	F018353	N/A	MSKPKAKKQSIELPDVMASELVRIVNTAHEDGKLIVGFVACLELFDGKKKTVKIVANQDMPQHSVFGIINYAAEKYQFTVSPDEDEDDDFYDPEWFHGQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10713

Overview

Ecosystem & Geography

Associated Families

Sequences