Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10719 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10719 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15219
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15219

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F049622	Metagenome	146	Y
F074589	Metagenome / Metatranscriptome	119	N
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1071919	F074589	AGGAGG	MTPAQIEGFIDRICGLFPTSQIGRNTVKNTWTADDFLLLQDVDDARKVVPMIMEHHDKFPTLKEVHHEFRLLRKPAIEQTVVICEICDGNGWDTGKRVKVGTKDELLCEGFTKTVLDRTYTYVVPCKCREFGAA*
Ga0151516_1071920	F039535	GAGG	MSAIATTCRGQTKRKQKPTTKSKKEDKVNGVNVKKIICLCVISLIGLAGVADAAKAPQEKVGKQMVQHPFDFVPEVKRDVPKWAKCPELWNKLRDAGWLERDVVKADEIVWRESRCIASAHNKLDPNTVQGVKGSLGLFQINVFWIQHTTFYPRGYLQTVLDREFVPTDLFDVNTTIDAANALIAYDRAQGRCGWSAWLGC*
Ga0151516_1071925	F036680	GGAGG	MKITKHSLDHIELVSSGDTALFEIRLVVAMTDWSDDEAEAGFDEIGALGWLMNLLHLASRGEDIKTGAEAFLQAMMTLDEQRVYLARVERISMNEEGTK*
Ga0151516_107194	F049622	AGGA	MKKAQDIAQRLLSLFMANALAIVTGSAIVGGIPVWKAAALAGFTAVAQVAERLAKASVDGSLTAQEISDAFGGNGKPVAKKRSAK*
Ga0151516_107195	F035302	N/A	MKRPYTGNKDGLAEGERKGLRVFINQLTKLYPALWDNGSYVNRSMRGKKDSLSVHATGRAVDLSFRYMAKEKRGIPEGGRKQAMEAIDFVVKNADAFGLEAILDYYPIPHGRGWRCDRASWNVYTKSEIHGAPMGDWVHFEISPALADNPEAMRQAFAQAVKPVA*
Ga0151516_107196	F082668	N/A	MSDALATIIVALISTIGVVIVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKTVNKVDDKLDKHLDDHAEGLTNGKTVRRN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10719

Overview

Ecosystem & Geography

Associated Families

Sequences