NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10841

Scaffold Ga0151516_10841


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10841 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13839
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018702Metagenome / Metatranscriptome233Y
F023107Metagenome / Metatranscriptome211Y
F043392Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1084112F043392AGGMEIVQKDYHPNGSSAPFIAAIIDDPKDGDTKLVIMFDEVDYVAVFSLDSLIRDEDISSRYNGHSGDKYERLREDMWDGFSS*
Ga0151516_1084114F023107AGGGGGMDEIEVTRTVIFVGDYFTLMTTIVLDESLRDDGENDYDFAVRLASVLFVELYNFDVEAVSNEIGVTDEQGEEIEDDN*
Ga0151516_108417F018702N/AMKTEAKYVRRRIAVGLIFLAFIAWALDATTPEMCKVPTEQMNQFCLDLLYP*
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