Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_11107 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_11107 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11507
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (57.58%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

11507

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (57.58%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y
F008814	Metagenome / Metatranscriptome	327	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1110710	F001280	GGAG	MCIECGCGALGSETGIIPVTVTDVSRDGESGLTLDMTSTPEQTRQFINE*
Ga0151516_1110714	F014017	N/A	MDKLADYLDENHRKKIADEIRYLELPPEWRPSEVIRYIVRIIEKNNG*
Ga0151516_1110718	F008814	AGGAG	MDNKMTVLEEIIKEIGEELYQKWYNGLAIEDRTEESSKAMATNAGETTVWVIQTFMNKFNAAAEELKPNDSN*
Ga0151516_1110720	F016396	GAGG	MRKSERLRLLEMQVVRLEMMVELYSQSLTNLLESQGMHTPNQLDAGKWYRSKLDKLDNE*
Ga0151516_1110723	F077310	N/A	MTLDANSVIIVIVASILSGMGTALVAEIKESKREKVRQAEREQDMLRMELKDLEIKLYKLEKDLIEWRDKYYAAVQELIEVKAELEDTLIKLNHIILHD*
Ga0151516_1110726	F000473	GGA	MEFINKDKNHFKYGVNEWTGEPNKPVFYTPEMAKRIREIKKPDMGLQMDIVRYPDFLTIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN*
Ga0151516_1110728	F012975	AGGA	MLHLTLKGVEVFMERSKTKSQESYWDNYDLLIWKQNPGGFTNVKGMFRKDSWGITERIPVNEQGIWKLPSKYVKHFK*
Ga0151516_111077	F007921	AGGA	MINWLVNRIFRWDSLRKAIFDEVRLYQSVDRSIWQYEHEHPSNLTWSEGDTWYGWTYNEGKKRYYFDDIGNTSLMGLWEDQWLREADTKQGE*
Ga0151516_111079	F026561	N/A	MSNFIKDDGTGMTPPPAAGSASGAVTSRDATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_11107

Overview

Ecosystem & Geography

Associated Families

Sequences