Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_11180 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_11180 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10926
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10926

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (21.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F012014	Metagenome / Metatranscriptome	284	Y
F021096	Metagenome / Metatranscriptome	220	N
F060705	Metagenome / Metatranscriptome	132	N
F062696	Metagenome	130	N
F064517	Metagenome / Metatranscriptome	128	N
F098891	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1118010	F098891	N/A	MSIAQTAILASALKGNSSSTPAVKPTSFTESIAQKPIQWLVVAGVVVYFGKKFLGGLVKTGEERRTETAETSTSTSNPFSFKSFLAQNIPTGTKLLTASGAYQNAKQIYDALNVYLSEDEDIAIGVFTSLPSKTQVAQVSQAFYNYYKKDILYYLKNGNKTIDFGTGGLSDSEYARVIDNVSRKPKF*
Ga0151516_1118012	F064517	AGCAG	MARTTTENIFYGKSQQIIADGCFAISFFRPSTSNPVNVAGIPLEAGQTLSIKQNVGDEDWSTYEIVFGTGASTNELYVTKIMPLTRG*
Ga0151516_1118015	F062696	N/A	MKNERYRIFYICIVGLCLTACSPSNRLSRLLKNNPYLYEIFTHDSIRVQTSVVSDSIFFFTKEKDTITFNNATIYRKSDTLRLVQHCPPCTTYITKQILQPTQKYIKEKGFKRSLREKLEDAIFPILIGLLLGFIITRKG*
Ga0151516_1118017	F006345	N/A	MKTENAIQILKEALHIAIAKGCYGLIETTNIVKAIEHLENQPDIQFGEITED*
Ga0151516_111805	F012014	N/A	MNLLSKEVLIGAAALGAGAVAAKVVQKKVLPMIKSDISPVVGNLSTLVLGILTPVAIKGSVGTGLGAGMVAVSVAGLVDPYLAKAGITGTDDTYLGDVLMGETGGDVLMGATAFEGATNDFTGAGAGEMDY*
Ga0151516_111808	F021096	GGAGG	VAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQNSYYFSSQTMLDGINATITAIEIVPSTELTKLPTGQTNVDSSILPNGVLYVSNLKRQIIATLPLYGLQRSANNGKPTFTYFNDQVWQNCYVEFTSSGFTTPVTPLTFRVYYVKKQKN*
Ga0151516_111809	F060705	N/A	MAISSLNFIISQFETEKYRYFAIYDEDGDRVYLQNDLIDVDTAINKLRNFFKDNQGYYTIYVMGKKLVNKQNLKSRDDSTIAKYNVEVSMPVLPQGVNGLTGMGGNSMLPPDDPRSNAPNMFQLLGQMSQVEQQMKLMEKDHQHYRREKELLDRIDKLEEEGNKSKGMGAIVDRLGEHLQDPNIILGLISGVSQLFKKESVVPMHGVKNNDMMMINDNDIMPMNGIDEQVINNISTRREKMVGAVNFLMQHDPNFPENITKLSELAKNKPAIYTMAVGYLNNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_11180

Overview

Ecosystem & Geography

Associated Families

Sequences