NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_11212

Scaffold Ga0151516_11212


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_11212 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10727
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (64.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F054798Metagenome / Metatranscriptome139N
F060726Metagenome / Metatranscriptome132Y
F074795Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0151516_112121F074795AGGAMTKEQAIVKILKVLNSRMAVMSKPMRDEALTVAEEYGITAKDLIEEWTRIAERI*
Ga0151516_1121211F000325GGAGMKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLNNGCYAEATENQYKNARVAGFANIITEKNKIRAMILEAKRRKKSIRWHERGDWFLNGELDVEYVANVTWACESILADGDTLPDMWFYTHIYDDRLVSLEKYMAVYASVHDDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKKKADAWRAALPKLVVLNGSKFVTCPEIRRGRATITCTGTKDSISCDMCVRGLANVLFPAH*
Ga0151516_1121232F060726AGGMYRNVLLTDKEISLLKRVVGDTLHEKIVPEARNLTVILNRLRGIKPLIPNNQFLNYGK*
Ga0151516_112124F054798GAGMIYLNLNEIERLCEIVAYLTKMKMGVVAELKGTKWHIEVTN*
Ga0151516_112128F006543N/AMVETNTNLKGSDMKKFSFVVDVVADELDRDSVVDSIRSCLTDALPSDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHNGKVEAEAEAVA*
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