Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_11236 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_11236 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10622
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

10622

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F011227	Metagenome / Metatranscriptome	293	Y
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F043829	Metagenome	155	Y
F047481	Metagenome / Metatranscriptome	149	Y
F091307	Metagenome	107	N
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1123610	F047481	N/A	MDSKSIGMCVATILIKVWADIALSEVGVVVAILAGISTIIYNVYRLVKEIKS*
Ga0151516_1123615	F034850	AGGA	MEEDLILGEGEEVEYIEEEVGYRFTEYISASVEVLTMLETANPMTKEEVEKVQELKKLCFEMLEFSVKSMHQTLFNSDID*
Ga0151516_1123616	F043829	N/A	MNQLPKWGDLNTYERHKLLGELIDSMIYSGEALQHLKVTVEKFRAMGWVRSVIMPDIENEKES*
Ga0151516_1123618	F091307	N/A	MKKQVTTNVRIPAEWLKSSIADIMIMVTATINDTEDMVDVCVREILFPGYHGINIESQYHSNFYELVEQKCMDAYTFKMDSHYDNEYYADYVL*
Ga0151516_1123619	F093533	N/A	MYYDRIEMTLEVRGEVRATAFPLRNHESIERQRHQWYYFYGLKTIKGWEIYITQKSMMQNSMPFRIEKSFPYLIKSQNNESTESESTDINCEPTDTSGGLEQVVGKRQG*
Ga0151516_112364	F041184	N/A	MASDFRPGKLDIQMWRNDTWKQVFTLLADTTPISLLGATVYIQVRKGCGGVLALTLTNGSGVTIGGVSNNQVTVSKLVDIAKGNYVWDMQVTFSDTTVKTYLEGDFIVYDDVTKP*
Ga0151516_112368	F011226	N/A	MAKQISPVTLWVNGESKEAQYLQVTGINDNYESSATNYWQMFTMNIDAEGVESIGESVAQGNLTISEQDYINWGDQPAMKINEWIYNWVADKLNLVILP*
Ga0151516_112369	F011227	N/A	MNLTELKAQAYDILSNLEYLQKQLQEVNQKIAEELQNQKNENG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_11236

Overview

Ecosystem & Geography

Associated Families

Sequences