NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105246_10090188

Scaffold Ga0105246_10090188


Overview

Basic Information
Taxon OID3300011119 Open in IMG/M
Scaffold IDGa0105246_10090188 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2207
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter robiniae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081522Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0105246_100901882F081522AGGAGGMTPLLRMAALVVAALTVSASAFAQLSLPLPSTDDVVSAGGSETLGTLPMGNLPLPVECPACITVDFNDLTPEQVVSPDRYTTLGLRLEIGPSSTTSGVVEGSLTEGPCDGTRSLKTQPFIGPSFLLRFPQGVTRVSLDAGDIGSSDSDAITVKAFSDDALTTLVAFDIGVLLQGAPTGCVRLSVQAPLIKAVEITSDSVYVLSSNSASGVSSYPNSIFMDNVTFAPAL*
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