NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105246_12166932

Scaffold Ga0105246_12166932


Overview

Basic Information
Taxon OID3300011119 Open in IMG/M
Scaffold IDGa0105246_12166932 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039297Metagenome / Metatranscriptome164Y
F073877Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0105246_121669321F073877AGGAGMPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRTEVIPLEARSSCARHAI
Ga0105246_121669322F039297N/AMYSDVLYSFTIGFVGAILFLLVDKYEPEGPLARLLKFLILVVAGVAILHKLQPYGLALF*

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