NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0150983_15380945

Scaffold Ga0150983_15380945


Overview

Basic Information
Taxon OID3300011120 Open in IMG/M
Scaffold IDGa0150983_15380945 Open in IMG/M
Source Dataset NameCombined assembly of Microbial Forest Soil metaT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1338
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.532967Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019891Metagenome / Metatranscriptome227Y
F057937Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0150983_153809451F057937AGGMSKIIRTFHNGKNEEVGRLTFEEKDDRLHVRSSAPPGIDRRFRTEKGAADWWQSNVDPETGKIRRQRDV*
Ga0150983_153809452F019891N/AMSDWSKDAALRFAALQKTRQIQDAKVIRDQNDLAHSVAKTWADLCELFKVRCTEFNAEPDVAGILNCDNTRHQELKITRTDTAAMLRGTFDAKRHTIHFMGPNIGKEKAEIKIEIVAGSSTMRFVDSLQRKLDPQDIVDISLTDLLQLN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.