Scaffold Ga0150983_15989009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0150983_15989009

Scaffold Ga0150983_15989009

Overview

Basic Information
Taxon OID	3300011120 Open in IMG/M
Scaffold ID	Ga0150983_15989009 Open in IMG/M
Source Dataset Name	Combined assembly of Microbial Forest Soil metaT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2663
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.180244	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038768	Metagenome / Metatranscriptome	165	N
F055038	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150983_159890092	F055038	N/A	MVFEFLLLVRSVQTKTVTKYIYFYAYIFCVFAVSTVLYIERSKPNFYDAWYWPTQFATLAVGFGVVLEVVRQALDAYPGAKRFAWRASCAVFAVTFCYVEWRVARRTEWTTLAATVELERDLRVVEALVLATVLAIVFYYRIELGKNVTGMILGFGVYVSVSLTTLALRSFVGPRFDVAWGLLQSASFVFGTAVWTVALWSYSPNPKPPTTGRGGRGDGGYDALVRGTRAQLESVRSNLRGVAGS*
Ga0150983_159890093	F038768	GGTGG	MIGLVLYLLVGVGLLVILWVLARRERAPVEGCGRQFVEARQALRTLQLGLLPDNLIKRIFDREDFRYVMATSPGEIGELFLQERKRISLMWLRRVRCEIRNLMQFHLNYSRLHAKLSLLTEIRLALDFTLLLLACRALRMLLYMRGPYGAGAMVGVLTAAAGRVCASSEKSLAFLNPPALESIRRDSAGDGATI*

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