NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136709_1003860

Scaffold Ga0136709_1003860


Overview

Basic Information
Taxon OID3300011184 Open in IMG/M
Scaffold IDGa0136709_1003860 Open in IMG/M
Source Dataset NameFreshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2244
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: Indian Creek, Illinois
CoordinatesLat. (o)41.6655Long. (o)-87.5437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003583Metagenome / Metatranscriptome478Y
F053888Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0136709_10038601F003583N/AMVKAKPLPKESGSGNLLLAVTLLTVFAGVSALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGAAVFLRSRRQKAS*
Ga0136709_10038604F053888N/AMPQSLISFIKGLDGRVLTLARPVLPHAARRLVSVIPQLNALNAAGKSQADAAEAMGVSVGCIRNWITLANIPWSNLNKRGPYKTNA*
Ga0136709_10038607F000957GAGMRNLILEIFEVNERIMTGDICSAKSAIASTNVKKILNHYHEALHEDGAIKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV*
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