NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137482_100908

Scaffold Ga0137482_100908


Overview

Basic Information
Taxon OID3300011196 Open in IMG/M
Scaffold IDGa0137482_100908 Open in IMG/M
Source Dataset NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4107
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameMidre Lovenbreen, Svalbard, Norway
CoordinatesLat. (o)78.99166667Long. (o)12.23Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014266Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0137482_1009085F014266GAGGMNFQQVENVLIRFRGETVHIKTMSGGIYEGAITDVTNDFVTLKVHGAAGEIDQVMVLLHSIESILPRSRT*

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