NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151674_1001220

Scaffold Ga0151674_1001220


Overview

Basic Information
Taxon OID3300011252 Open in IMG/M
Scaffold IDGa0151674_1001220 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8706
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079364Metagenome / Metatranscriptome116Y
F090245Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0151674_10012204F079364N/AMKGGDEYDALTNARKFHLWKAGQLKKIKRAYNKRFRKCSKRMTKDENR*
Ga0151674_10012207F090245N/AMAGTIEDMRWEIKQKQKEIDTLRRFLTKNKLIREFDDEERKRALERYEANKI*

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