NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151674_1013029

Scaffold Ga0151674_1013029


Overview

Basic Information
Taxon OID3300011252 Open in IMG/M
Scaffold IDGa0151674_1013029 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2031
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019393Metagenome230Y
F041144Metagenome160Y
F048575Metagenome148N
F097155Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151674_10130293F048575AGGAMTALQNSILLDEEYEYEVSVVDLWKISGEEDPYSAIHLAMNTLRYPNPNVPDEEIEEHLSELWEERWHEYYV*
Ga0151674_10130294F019393GAGMYSEIKTYTSMSGFIQAHEGLWHMLGVKYKKLDKETVIINNTKWKLMKGNMTCLTK*
Ga0151674_10130297F097155AGGAGMKPDKYYIDASSFLEVTSELADFMMQEKLGEKYYEDCIYVDEDDVYNFTDEGQEMFNNYVDIMTRILSEVNIVHEDQLQEGE*
Ga0151674_10130299F041144GAGGMLSDAITTVGFALQSHVNTCYHEDTEENRAEREELEEAWAIIKKHLKEKDE*
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