NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151674_1017608

Scaffold Ga0151674_1017608


Overview

Basic Information
Taxon OID3300011252 Open in IMG/M
Scaffold IDGa0151674_1017608 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1434
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F027854Metagenome / Metatranscriptome193N
F085570Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0151674_10176081F027854AGGMTEKEAMKLHELIDELRAKLQKSLQEILQLRKDLDLEREEHQLTQLRYDNVKNAINKEVDRLNQRRP
Ga0151674_10176084F085570N/AMDELMHIDSYKIWSYDYDYKNGKKSKTTSIKQHLISEECIDSRGLINLLLDLDNAWHNGYGKNIKVEVTFEPHEGE*
Ga0151674_10176086F003677AGGMVNQSLYYFEQDVGKKVYEMEYEVNYVTKWQVLAEDRDKATDIWIENSKMDLSTEDGKDCVCSYVKDYSQVGSTKVIAEIKYNKEDDEVYADES*
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