NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151671_1000769

Scaffold Ga0151671_1000769


Overview

Basic Information
Taxon OID3300011253 Open in IMG/M
Scaffold IDGa0151671_1000769 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2226
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012671Metagenome / Metatranscriptome278N
F059967Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0151671_10007693F059967N/AMTKEELEHQIAMLTNALESGKAHVVDYENDLATAKKKLEDINKPEITPLQFDKIQEAIEEGVGNFAFDDDANYDKEFGMEYDGKVHLESIDLTCSYELVEMITKEVHKLFKEAECPEELDTTEPDNHKPV*
Ga0151671_10007694F012671N/AMKLIDKLKPEVIEALDEAKIEYSASYRAIFATLNSVSEYRELTIDQLNLITAYLPQDLRPYSEIGWMYGDNILDKKHRL*
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