NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151671_1010744

Scaffold Ga0151671_1010744


Overview

Basic Information
Taxon OID3300011253 Open in IMG/M
Scaffold IDGa0151671_1010744 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4245
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0151671_10107441F001655AGGAGGVKQPENDHTKHFGNDGPVGNDAEIIVYYEERGPAEPVLRIPFWYYKEELGMFEHFEASVRRTAKALAESYTYWPEGYVHVQAII
Ga0151671_101074411F008883GGAGMNFGRYTIWYNHEDHVWDIYDGRKGFKYPEFTINNYSRLLCGLRDRLGFLDTDRNHRRFWRVMRWWDRLRHGRR*
Ga0151671_10107443F002858AGGAGMLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVIRKDLELSFDDRGNVVMPRVVLDKILFLASDELPEGDE*
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