NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151671_1050959

Scaffold Ga0151671_1050959


Overview

Basic Information
Taxon OID3300011253 Open in IMG/M
Scaffold IDGa0151671_1050959 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4171
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F004956Metagenome / Metatranscriptome417Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0151671_10509595F004956AGGAGMKMISPNGEVSIEAHPSKVESLLNKGWKEEAAPSKDKVKSSSKEKSKDEVIENGDS*
Ga0151671_10509597F002716AGAAGMSQYRLETEEDMASYLDPTYGHGVSATYINNGVSTDINIILNNEYVEQEEGIGVEALEPIAYCRSIDIPSVAYGHSLNVSAIKDVDGNTLKAAQNYTVVNIQADRTGFSALMLEEI*
Ga0151671_10509598F001582GAGMAIESAADFTSYLDINTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINVIIDQEYFNIEAGTVPVAGYQPRAIVKASDVPYISQKDKLLINAITTNRGSVLKPATTFIVRAVEPDNTGFVELVLEEE*
Ga0151671_10509599F005495N/AMLKWNGGSNTPNLNMKKFLIIKDTVANGQKVNAGDIIELREDVGHELCAYGKASVYIEKPKANKEDRSVGLKTSKVKAPKTRAKK*
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