NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151675_1000504

Scaffold Ga0151675_1000504


Overview

Basic Information
Taxon OID3300011254 Open in IMG/M
Scaffold IDGa0151675_1000504 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2545
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015659Metagenome253Y
F016879Metagenome244Y
F017558Metagenome / Metatranscriptome240Y
F020445Metagenome / Metatranscriptome224N

Sequences

Protein IDFamilyRBSSequence
Ga0151675_10005041F017558N/AMYFIIFKNKNNILTSYSNQIFSTEAEAIDYGNRSLKKKDVWQVVRYNSENYDKYWYK
Ga0151675_10005043F016879N/AMSVFKESFFEASFKTIEEFDNAEVASAKLNVSEDANLEIIDIKLNKSLIKTNNDKEHENATNEQHSQTVSETK*
Ga0151675_10005046F020445AGGAMSDYDNSAALWKRQARDTDVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEEQPF*
Ga0151675_10005047F015659N/AKNERARTVMIERSLKDAIQKFRQNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELSNGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEITKPITKPTAKPKANTKELADEWIEVLKKTATHSVSVGKFEQNLNPFRKEFLSDLQTIYTDLIQQQRIDPAYISLQKQITNRKQ*
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