NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151675_1002001

Scaffold Ga0151675_1002001


Overview

Basic Information
Taxon OID3300011254 Open in IMG/M
Scaffold IDGa0151675_1002001 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3357
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027055Metagenome196Y
F063586Metagenome129Y
F083394Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0151675_10020014F083394AGGAGMAIIKKLIKRVQFEIKAVYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFEINGRMFDI*
Ga0151675_10020017F063586AGGAGMDKLKTLIEFKLLCECHDWYYQRSEDPHAYDRGDRNRKYLESIMREGGEEYERIYFSYKS
Ga0151675_10020019F027055GAGGMNTYQKIILAVALTCAFAWVSNDELDHDIKQAAQYKQDVCTGSIPDYDNIKPDCRGLTNVNNH*
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Institute for Fundamental Biomedical Research
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