Scaffold Ga0151620

Basic Information
Taxon OID	3300011268 Open in IMG/M
Scaffold ID	Ga0151620_1000036 Open in IMG/M
Source Dataset Name	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43400
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (16.28%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

43400

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (16.28%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location Name	San Francisco Estuary Delta, California, USA
Coordinates	Lat. (^o)	37.986944	Long. (^o)	-121.523611	Alt. (m)	Depth (m)	.2
Location on Map

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Source Dataset Sampling Location

Location Name

San Francisco Estuary Delta, California, USA

Coordinates

Lat. (^o)

37.986944

Long. (^o)

-121.523611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031491	Metagenome / Metatranscriptome	182	Y
F041189	Metagenome / Metatranscriptome	160	Y
F066792	Metagenome / Metatranscriptome	126	Y
F078724	Metagenome / Metatranscriptome	116	Y
F093871	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100003614	F093871	N/A	MIGPKYRLTRLNDGLVKEGMQVAWINYKLTGNSIYPRPAKGRGFVIYRSMGNYWQTTRVQSFKRLKGGIIMFTTENSDYKLEKLK*
Ga0151620_100003627	F078724	N/A	MIESLYTKYFQKSRAFLFPALGIKRTSNFTPSGTYLSVEGLVSPEDIKLVCSFPDDESEGFKAFEQAMLLSNPLFLEVIPIQGYKLYVFDFQIYKADWFNFILGKYSKLSAVLKRAIKNYYGDKSSEYKYIETFLYPEKYFTLYAKLLDVEVKTLQETGELCDPCDMEKENLKIPVADLDLLKKGI*
Ga0151620_100003632	F041189	N/A	MFSTKGQEVKTTGGTAKSLQTGVVYAHIYSGQVRTSNKGDKKTLELVLEGPASEGFEGWAIDKNNPDGPKFTGQSSRVSATIWTDQFNDSNVSKNEIMFKLAVIASELGLRDQIDNISASSLEDWVEKAVYILKGQNLYWFLKGTEEEYNGKTIIKLSLPKYKFVSADEAKLDKFDKNNQYHYKALQNKPVSSFEPVNSDFDM*
Ga0151620_100003634	F031491	N/A	MLAKNYKTKTHSMTSNTQQVTDVKELKRLKLETIRDFHQDLIDDLEIPRTDFNMKMPFYDKHGRMVVGIFSSEFRKEKGFFFELITRDLTPADAERKVYRVPVSSSYEEEYELNEKGSYLVPLEELRVVNPTSVAIKKTANFGPNQEQSLPSSLPKSPMQAYKAPATMEDAPYSEMTIRDYYAIQTGKPVSSKTWLNELIKSTK*
Ga0151620_100003641	F066792	N/A	MATENASIAAFKVWIFPSLVSLVSLLIWNDVNEIKADVKLLMAQSNVDKTRIDNLERQLFKAASVPVAPTRQLPEYQEVVAVLPDDKALKLKTIKYDF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151620_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences