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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011268 Open in IMG/M |
| Scaffold ID | Ga0151620_1000648 Open in IMG/M |
| Source Dataset Name | Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13446 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | San Francisco Estuary Delta, California, USA | |||||||
| Coordinates | Lat. (o) | 37.986944 | Long. (o) | -121.523611 | Alt. (m) | Depth (m) | .2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043913 | Metagenome / Metatranscriptome | 155 | Y |
| F046914 | Metagenome | 150 | N |
| F083900 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151620_100064818 | F046914 | GGA | VTTRKVSESAQEIVNGIKGRKPHDGIPTHRVVDDLSTVEVEHPGEREQGRRARRAADLDEVRVKKQLDRAEAKKRAEQLRVLGEEMLASGVASREILPKLAQGIIVDLGLRLAGGEWEIKSAEEATKVAKIWYDILRLESGQATSIQEQRSGSPEDRLSRLEELKLEAKRRVEAGLRAIGDGA* |
| Ga0151620_10006485 | F083900 | GGTGG | MNRLDLRNAVKDRLAIKSDGGGTSLDGLITNAFVNTSLNDALNRVSMERDWWWLASTASLSFDTVNGAATLPSDFMRANELVINSSPAEWVPLETFLDPTSDNSTFGWTIYGNQAKITPIPSTTTTGTLYYFRSEPALSSDSSTPLMPVVYHSVIVAYASHLCAARRQDEQRASLYLQEYGTFLKSMNDDNRTTIKRRIKFTRARDYATWE* |
| Ga0151620_10006487 | F043913 | N/A | MTTMIRAADLMGNVAGGGEMAEVSFDVYDIANRIQRGDESGWRGDPSASLMFNPMAGRFEVWMVDATGTPYVACSHTRCDHTLIVKLIEGDWQKGKALHEDLMKKNKQIRDAHETAEKEKRLELADKLHWALVRDVGHLEGSNRRIHSMNEKGK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |