NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151620_1003296

Scaffold Ga0151620_1003296


Overview

Basic Information
Taxon OID3300011268 Open in IMG/M
Scaffold IDGa0151620_1003296 Open in IMG/M
Source Dataset NameSub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6016
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location NameSan Francisco Estuary Delta, California, USA
CoordinatesLat. (o)37.986944Long. (o)-121.523611Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F005389Metagenome / Metatranscriptome402Y
F009005Metagenome / Metatranscriptome324Y
F023789Metagenome / Metatranscriptome208Y
F093404Metagenome / Metatranscriptome106N
F102567Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0151620_100329610F093404N/AVHTNEEQNKPAPGQIAWNKAAHSTCELFQNESGGYYPVCQRIETPSLIRSEYTPIGSRLQYPSKWGRKRAATHLLEFKIADANKQIQDAKAELEKLEACLSDVQSWDDDSKD*
Ga0151620_100329611F000785AGGAMRVSNKTKGMRFDCNRLWNWAHEKLGDSKCQAIAFYWDTNPEAECGYYDWEKTIWVNLAQCKRMISVQKTLLHEWTHAQQTFRWYNHYNLKYGYKKNPYEIQARDNEKLVKRAYKRRTK*
Ga0151620_100329613F023789N/AMDTSNTRGLTEGERAQLIHKVQRLEWLLKECIGLEEYELCSQIQNVIQSHYAVLTTNTNERTP*
Ga0151620_10032962F005389N/AMATKSNKAAKAAKRGNIYETVSNNIQKITRPSGNVSYRVRVTEDGVMYSQYETSLKKAKTLRNEWVG*
Ga0151620_10032964F102567AGGVGKRYANATYAISAIEALDSEKVIAKGAKSILKEMDAAGIVPLDVHSI*
Ga0151620_10032969F009005N/AMLSENLMIETARAIGMDEELLSYAQQIQRQLSAEGDTADWLDCLEMAYNELILNQLH*
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