Scaffold Ga0151620

Basic Information
Taxon OID	3300011268 Open in IMG/M
Scaffold ID	Ga0151620_1005638 Open in IMG/M
Source Dataset Name	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4627
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4627

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location Name	San Francisco Estuary Delta, California, USA
Coordinates	Lat. (^o)	37.986944	Long. (^o)	-121.523611	Alt. (m)	Depth (m)	.2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

San Francisco Estuary Delta, California, USA

Coordinates

Lat. (^o)

37.986944

Long. (^o)

-121.523611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F007169	Metagenome / Metatranscriptome	356	N
F008356	Metagenome / Metatranscriptome	334	Y
F009682	Metagenome / Metatranscriptome	314	Y
F022862	Metagenome / Metatranscriptome	212	N
F024782	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100563810	F008356	AGG	MANTSSISEFERTKPTETYKKISQLEKLIKEEQIKTENLYSNRIATLDKMLKHTQDLMETFKRGE*
Ga0151620_100563811	F009682	AGGAG	MQKDLYLKSPEERIIIQSDDLKFDGKNIVIPSYYAGIISDYLANTNTEGMNDADKHDFMAFSSFFEAIVDYKQSKYNK*
Ga0151620_100563813	F001840	N/A	MKEEQDSVFLICDCFSHGLIVEKFKDEEEVSISLFERGLEGRILPWFSRLKWCWQILRYGKPWSDFVILNTENQKRLKEFL*
Ga0151620_10056384	F007169	N/A	MSYQLQFDFETPEQKEKRLEEWRKQELEIDKMFETDDDYYKYNKYVDKLLDLLPYRLGWGFKNNWSELRWWIKCKYQTFRYGVSDDDVYSLESRIAEYIVPRLQYFKKKGKFGIPMKLLPSNYIYLEGEEKDKVEKIGEQEIDRILDEMIFAFDYIINPDKYVPFPESSVKWDLKDRNYFNREKTIEEKIAWDDYIKKCEECNARRKKGLQLFVEHMDILWI*
Ga0151620_10056385	F022862	GGA	MDMKFTTEQYNFICQTRDEIRALNEKQHILYNNLLKELNISIYAEDWMFDYIYNESGSIDDIEARMR*
Ga0151620_10056387	F024782	N/A	MIEQAIERLRVFNKWRTGEDDRTMDEAGIKPSQVTEDIKNVCDELEKLISMYASGN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151620_1005638

Overview

Ecosystem & Geography

Associated Families

Sequences