NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137393_10053095

Scaffold Ga0137393_10053095


Overview

Basic Information
Taxon OID3300011271 Open in IMG/M
Scaffold IDGa0137393_10053095 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3179
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002143Metagenome / Metatranscriptome590Y

Sequences

Protein IDFamilyRBSSequence
Ga0137393_100530956F002143N/AERFFHLGKRIVGSPNPIAIFLAGCRECLTEWEVHAKGYWSQVRNADGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSSLARVGLAKGTVVAPAIERFEEWRTWLQCASELSTMLLQAKVSEALDALPRGREPSPPGERFRRAVLSAMPDIEAMELVERFFHLGKRIVGSPNPIAIFLAGCRECLTEWEVQAAKRSRGSSSASGSLVCPRGQTSG*
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