NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138293_127820

Scaffold Ga0138293_127820


Overview

Basic Information
Taxon OID3300011282 Open in IMG/M
Scaffold IDGa0138293_127820 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.5935Long. (o)-78.5142Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003497Metagenome / Metatranscriptome483Y

Sequences

Protein IDFamilyRBSSequence
Ga0138293_1278201F003497N/APFSDRHARSEHGMQGSRDVALLLPVTAFARLRISAPAPICSFYLLEAFASEQPLARPQRLPSFEGHRGEVNAPDLSLRRNSELFCQPVRPLAPILDRALHAVGACSPPRPVAVFQAQNSQTSIQLPLPFRTFILPDRSAQSVARSEKLTFVPGPLSLRSPKASISLIN*
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