NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0138385_1242286

Scaffold Ga0138385_1242286


Overview

Basic Information
Taxon OID3300011324 Open in IMG/M
Scaffold IDGa0138385_1242286 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic ocean - KN S17 DCM_A metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1231
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic Ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002742Metatranscriptome533Y
F014384Metatranscriptome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0138385_12422861F002742N/AINLIKDMMAQLEKEADEDEEVYEKVACWCQTNDKSKTTSIGDAEDAITSLTADIEEFTASSARLNTEIKNLEAEIAKNQEALDKATALRQKELAEFNGEEKDMLQSIGALKSAVTVLSKHNSFAQVPSEALINIAATLKWQFHKHRDILAEITTPAQHKAIAAFVQAPGDYFDAEPTFKQSYAPQSGQIFGILKQMKETFETNLSTAQKEEMQGQQAYESLKAAKLSEIKAGEDQRDTKTQELADTDAKNAQA*
Ga0138385_12422862F014384AGAAGMNLKETCQMTDAEYEERQKARAEEIKGCSEALAILSSDDAHDTFTRTFNFVQVKKSLKVENKRANEAEKLLFTAAKKLGNPRLAALASRVRLDAFSKVTEQIDGMVKDLKQEKADDIKQKDYCTEELNNNERAQELKAR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.