NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126317_10049441

Scaffold Ga0126317_10049441


Overview

Basic Information
Taxon OID3300011332 Open in IMG/M
Scaffold IDGa0126317_10049441 Open in IMG/M
Source Dataset NameSoil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2364
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameStunt Ranch Reserve, CA
CoordinatesLat. (o)34.0938Long. (o)-118.6572Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F044745Metagenome / Metatranscriptome154Y
F081702Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0126317_100494412F023966N/AMIKEEAMDQNNRVLNRMGARELTEQEVEAVNGALKVNHTLTPCFIDKQKQLLNGDQSIGECG*
Ga0126317_100494414F044745AGGAGMNDQNRVLLRKGARDLNEQEVAMVAGGLQTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0126317_100494415F011803GGAMTKGENMNNQNRVLIRQGARELTPNEADLVNGGFITLSLCTSSPSPDGDQHVGEVGC*
Ga0126317_100494416F081702AGGAMNEQDRVLIRQGARELSPEEVEQVGGGFNTLVITFGPNGRDGDGLLE*
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Institute for Fundamental Biomedical Research
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