Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1011 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1011 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	60603
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	70 (82.35%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

60603

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

70 (82.35%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F000346	Metagenome / Metatranscriptome	1253	Y
F001530	Metagenome / Metatranscriptome	676	Y
F002933	Metagenome / Metatranscriptome	519	Y
F008614	Metagenome / Metatranscriptome	330	Y
F012428	Metagenome	280	Y
F026508	Metagenome	197	Y
F080865	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_10115	F012428	GAG	MNAFSNVIRLFFNTINTVQQLNLASLNLDLRTLPTDADYNSLRYGDVYRDTQGGTLQSGTNVLRIKVPIDLVGVQGTGAVGSVGPVGGTITKNLTGVSGAGAVGTMTP*
Ga0153697_101150	F080865	N/A	MSNTKLSYTAQAVSMASDLIEAKKCEDKATSLREGVNKQIIGMHKDNVVIGRYSKDGTGCSIATAWVDKLVLGGLSKKTAQNYLSLLREAVKTGKPVKDWGGTKAGGRQAAAGAKGSAKGKKEFADKLATCFRDAEFEGFVNDLEASWDNDEIKSLLEGIKSYLEASGLKID*
Ga0153697_101161	F001530	N/A	MQITKEFLETEIRSLETESQKAQTFLVQAQATIQAYKMLINRLEAPEPETEQSS*
Ga0153697_101162	F008614	GGAG	MMQTDVKSVHVEATATAVAYRTRVRGYQFITGGTAGDITFRDGGSGGPILIEFNIATAPTNPMSFTIPGEGVLFSTDVHITLPANAKITVFYG*
Ga0153697_101167	F026508	N/A	MVESAKESQMSPAEKQAREEMADRKMNAATDAAYTKSLTTTEYAPEKKDPRDAVRGQKGYAKGGSVGSASKRADGCAIKGKTRGTMITMKGGGCAY*
Ga0153697_101172	F000346	AGGAG	MDKADLKQDKKMMAGAVHKHEKKLHPGQPMTKLAKGGKTNLQMKQLGRGLAKVANQKKSSFTYKKGA*
Ga0153697_101183	F000332	GGA	MRWLILLLLLGLVGAVAKNGCHVREFYGIAYTVHDPTLRHKEMMAWLDQNAGHCKSTEYVVIWNNLSEWAGAADSTWLRNKVVHGYKDALEREKK*
Ga0153697_101184	F002933	GAG	MIPPIHKWYPMLDVADYPTKTDALERRTERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLRLEIFTNRKLDIYV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1011

Overview

Ecosystem & Geography

Associated Families

Sequences