NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1013

Scaffold Ga0153697_1013


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1013 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)60144
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (76.04%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F002933Metagenome / Metatranscriptome519Y
F005234Metagenome / Metatranscriptome407Y
F040071Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0153697_101320F005234AGGAMMQTDVLSKAAAAGATTTIFAGPARIKGLTISYPSGGTVVLNDGTGGTAKFSFTAPAAAGSINVLIPGEGIKCNTNISAVCAASTTAVVFYG*
Ga0153697_101371F040071GGAGMSDNPKLFPAWKQAVKTLLDSGLTYGSVLKRSYISELCDVPKPVDIDDVRRYDLEVLRCITEIKDILLTAHCMLMVSDHAGNYIIIEPESQTQHAVDAGVKAIGREMKRMAMGVSFTKTELLTDEGRKKNADAQAKISKLAGMLSLEKRELQRIADRSQP*
Ga0153697_101394F002933N/AMIPPIHKWYPMVVEADYPTKTDALERRQQRLEEEYKQALKMKKVKDKIDDLEFELYVKKAEQNQLRLEIFTNRKVDILV*
Ga0153697_101395F000332N/AMRWLILLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTQRHKEMMAWLDQNAQHCKASEYVVIWNNLAEWAGASDSTWLRNKVVHGYKDALAREAK*
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