Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1036 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1036 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	41464
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (90.48%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

41464

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (90.48%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F018684	Metagenome / Metatranscriptome	233	Y
F025943	Metagenome / Metatranscriptome	199	Y
F026858	Metagenome / Metatranscriptome	196	Y
F028458	Metagenome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_103618	F025943	AGGAG	MEKLFAVIENNKVVNIVVGVEDEVVAANPGKYIEYTNGWDYNNGIDGGPYFPIPVVEVPTE*
Ga0153697_103619	F028458	AGG	MSKVNKGTLALGWCDNGNTDGKFTEGVVSIALQCSNNGIELTHSMRVQGNQIGRQRQVLFDYWADQIKTDWLLWIDSDIVVNMEVVAKLWDVADKVNRPVVSGTYFISKENEGTLAKPYPALFFDVDEQTIQHVHPLPHNEVIKVDSAGFGFVLMHKSIIPKMREKFPNQSMFAEQENIGDKYVGEDIVFFRKMQEAGIPLHAHTGALVKHIKRFSLDVGYYDMYWTLDMIKQKAQEKQQQG*
Ga0153697_103627	F018684	AGGA	MEDWKLQVSYKTPAGDMINIRANTADELSVLLEGIGDYSTQVAAVQRLVVGAYNAAPLGTTPSTPNTTQSTYSAPTQGQGPLLTPPPSAVTPSGTASPTCIHGARIFRQGVSKASGKPYAFWACPTPQGTPDQCKPVN*
Ga0153697_103631	F008808	GGA	MKNEINPCPECGQQFDNVFEATDHLLEEDDEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRSITQDTYMTLFTAETQPDVILDVIEDMIVGSSMVGIDDELKQLLEDGE*
Ga0153697_103634	F001515	AGGAG	MTSKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKKAMANELATD*
Ga0153697_103635	F001531	N/A	MNWQQIEPWEYVIVAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVDEWEKIGTKDAKNLIYRSLRNHALDYCQKWKAKSVGYDVSDLYYYESDVVEALLPAVLRNEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAIKRLVNKLGGFKPYYDTDITETTETEPSEDSSYQELGTPQESEQ*
Ga0153697_103646	F026858	AGG	MSDNLLLDLTPREVEVIRMALRQAQDTHKRNDFKALVIETEELRSKIANAIIDNHTNGKPVSV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1036

Overview

Ecosystem & Geography

Associated Families

Sequences