Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1094 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1094 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	29874
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (19.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29874

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (19.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_109415	F052371	GAG	LTSSEALDLDKFKLSRTSQPISSLSAALVIDELLNGMQKLGVKGEKLPSNEDLLIMYKSIMEEYPNIKIGEINLAFDLAAKGKLDIEAETYQNFSMLYLHRLLRSFARYGMQKLNEIKPKEESKWQPRFISDDEKIETAFDCFKKFRQWDNIVFGVDVFKILHKRGSIIVTASETYEKVLSAMNEKMFEGSMQDKIDVKNKMKDDDYMEHQCYRMAVSEYFTKRINRGL*
Ga0153697_109420	F051129	N/A	MTQEDEQFIEDNIYNFECVKVGFMKNLPLHILIRYEQIYRRYLDGGFVLTSWCANCVADMMKRLIRYWEEYQATKAVAEPIEVPKKKGRPFKNPQ*
Ga0153697_10943	F034850	AGG	MEEDLVLGESDEVEYIEEELGYRFNEYISSSVEVLTMLEISNPMTKEEVEKVQELKKLCFEMLEFSVKSMHQTLFTNDIDC*
Ga0153697_109445	F041184	N/A	MASDFRPGKLDIQMWRNDTWQQVFTLLADTTPISLLGATVYIQVRKGCGGTLALTLTNGSGITIGGVSNNQITVNKLVDIAKGNYVWDMQVTFTSNVVKTYLEGDFIVYDDVTKP*
Ga0153697_10948	F093533	AGCAGG	MYYERIEMTLEVKGEVRATAFPLRNHESIERQRHQWYYFYGLKSVKEWEIYITQKSTMQNSTPSRIEKPFPYLIKSQQNESTEQSEPTDINCEPTDTSGGLEQVVGRGQSQVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1094

Overview

Ecosystem & Geography

Associated Families

Sequences