NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153697_1148

Scaffold Ga0153697_1148


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1148 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)24694
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (45.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F009066Metagenome323Y
F014487Metagenome / Metatranscriptome262Y
F015449Metagenome / Metatranscriptome254Y
F024499Metagenome / Metatranscriptome205N

Sequences

Protein IDFamilyRBSSequence
Ga0153697_11482F009066GAGGMTESPALHTPMSEEHEKHLAGIINDLARDVSKKYRKGQEEHGGALWRRPVWKDTWDEVLDLCTYVHTLRLQLGVIADLALQGASDESLCAAQSRENCRQILAVLQGFPSAQDKK*
Ga0153697_114821F015449N/AMIETFWGTTNLKVAAAVATYGAVLRPVDPVTCIVKDGQRQFTFWFNDSGTGNAKEEMECGWAQMQSEPEAAIRYIRAALENRETLLGLMKRAEPITAIKRGEQTLLVSERAKPDLKRALLNKM*
Ga0153697_114829F024499N/AMSDFTEALKESLAVLHGQTGTTVTIGSAAVTGILSTISRKENVELGGFDLDLNSTFTIDISSLATAPTIGSVLVANSVSYRIVTVDTSVGSYLLGLREK*
Ga0153697_11486F006891AGGMSTDQVVELAERLSLVRESIARIETRQSVILEVLERSQASLGDYHGRLREMENSAHSLRTKIWLISVCAGAVCSMVWELIKRRVGL*
Ga0153697_11488F014487GGAMPLLFLALFFFSCSPKHAPSSGLPDYSDMGAAEDAGKTPSK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.