Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1152 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1152 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	24558
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (17.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24558

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (17.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F020651	Metagenome / Metatranscriptome	222	Y
F033030	Metagenome / Metatranscriptome	178	N
F048948	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_115221	F048948	GAGG	MRKLNALWLLLTHKAYFVAVCKTGFNGDDMTTIGNYTYAMAETLINKHIEDVNNYIDQEDAIDEANDIINGIL*
Ga0153697_115226	F020651	AGG	MKVAILLLTQNRHDLTQRVINHNFYNSGYDADCFLIDNGSDTLRLFDYPFKDYNYSKEKRGIAAGVNAGLRMTENYDAVCLLANDILLPTNWLQNWVMFSQRVSKTGIIGIHCVEDLPPIVDGVHKTHTPFGDNFITRELIDKVGGYNEAYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTDYRRMKDESLARAQSVWDKYQDIYHNQKNIRCEYFA*
Ga0153697_115228	F020348	GGA	MEIEHRNYLDLHRPNYEMVQNGYVRNIDLDILKMYEHIYRKYMSEDFILTVWCSHCIFDMIKRLYEWYDAQPKPKNKKNG*
Ga0153697_115234	F011074	N/A	MQLVGLNVMPDKIKMSVLEDWIRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEIRKMIPQERVEAVPHLTDLEIIDYSYQEYKLLENRTFDRVFNPLSVFTKLNNTGIKKWTKEDGAIAKKKLMEIITYKANKMDMLSAKQYRDEWTESWLKNQARAVAVALFFEEQIKQNKTTFK*
Ga0153697_115237	F033030	N/A	MTEKKWSAGAWKKQTAKGEVINFTINDVRYSMWVNAYKTEDKQPDYKIYVNDFKPKEDTEGLPF*
Ga0153697_115239	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEQAYKDLLEFIERYQNVVDKPVFFNPINNNDTETTNLEPLAFGQDIDTNPGFNEVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1152

Overview

Ecosystem & Geography

Associated Families

Sequences