Scaffold Ga0153697

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1218 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011334 Open in IMG/M

Scaffold ID

Ga0153697_1218 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	19798
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (39.02%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

19798

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (39.02%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Daesunglee, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6746111

Long. (^o)

127.3841278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F016253	Metagenome / Metatranscriptome	248	Y
F023575	Metagenome / Metatranscriptome	209	Y
F058715	Metagenome	134	N
F059002	Metagenome	134	Y
F065771	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_12181	F065771	N/A	MGGVQKYLTRQVQEGEISKDDLLESQSKLSLLNQAPSLVLNAIAKGWMSYPDKLETITEEEETAKWIDTYDCERAYHNRVKGMTYREIGKLMGCGMNRVSAILHHGENIVLQRKMKSLGHTVVSIPSKATVQEHITNAKSKTKSKQ*
Ga0153697_121812	F016253	AGGAG	MSDRIQSIIKGGTGVYSISKKEAGEIHKAAKKVKNYAFSYWTRNRKNKESK*
Ga0153697_121819	F013412	GAG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVTFRSFDNDDMDAVNLLIEGTHIMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES*
Ga0153697_121830	F023575	N/A	MAVSKGLALVYGSKGTITLFTPAGVALTTGAISTIESYDASHEADVEQIKNSAGEVVAQVSANERISLSVTFIPSAADFAQAKLAAGLPAVNGYATIASSDGVTIGGVSLDGNYVYSGGGSVKFTNSGKVMVTVTVVKYPSLAGNAAVFTL*
Ga0153697_121831	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPNCLTSYGHGAFADPDLEDSMPAFPRIVVRASTAVAVHPLDRTCEVDITATLQLSADDTSEAQALAIVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANETT*
Ga0153697_121833	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVVSGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSTADRLLQESGSFLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0153697_12187	F059002	N/A	MNILNEIKSGISRLLGVHKKVETKEVLRTLKPKRSPKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSKKLRLKR*
Ga0153697_12189	F058715	GGAGG	VSLLEKLGLTKQSMEKMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHLTYTCRELAKKYGISSSTIWDIRESKSKIE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153697_1218

Overview

Ecosystem & Geography

Associated Families

Sequences