NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1360

Scaffold Ga0153697_1360


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1360 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14548
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F023340Metagenome210N
F035760Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0153697_136010F004670AGGAMQKIIFDLPLFRSTDPETSRQVTPMKVGSHRAILLAIYADATLGLTDEEAALRASAQGHEIKGYWKRCSDLRTAGLIHDLGIRRTLSSGSQGIVCAVTQSGLDMVRGWA*
Ga0153697_136011F035760N/AMKYTGYDKTATAKMAGTEKFVELCARRWSFKNLGTLVVRQMRSGQGMSVHSTARGMDLGFEDTKEGRAAAVQAMLWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGQPGWKKWTDSDNGGSKNGRWIHVELAPQSNGGHAEDGVALEAAWRALPKP*
Ga0153697_13606F005027AGGMETSTGELIAKLTNLSHNLALELRFKESSLVLEAVGALHALPNIAETIRDSWHPSFNSSGPSKGITYISNVSLGKSDE*
Ga0153697_13608F023340GGAGMLPSWGYMPLWSRDKLTLVQIFTDSATEEIVKVTVATRQAPWMTFASITEVEMVD*
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