Scaffold Ga0153697_1372

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0153697_1372

Scaffold Ga0153697_1372

Overview

Basic Information
Taxon OID	3300011334 Open in IMG/M
Scaffold ID	Ga0153697_1372 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	14233
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Daesunglee, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6746111	Long. (^o)	127.3841278	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048001	Metagenome	149	Y
F055298	Metagenome / Metatranscriptome	139	Y
F068601	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_137219	F068601	GGAGG	VRTNESQGNIVALSDIREERLRALSPYGPVKAGLTTLPTTNEVRLMELLNSLENVVHELNYKSFTAYDILNTAIQGVRAALSGTVIEEGGTDV*
Ga0153697_137227	F055298	AGGAG	MSNSNPLVDHLAVAGYRATGVSTEDLTSFIESFASLRASRVRGVGADQYAMAQGQKFEAFTTSDIIRELVEELADASNYIDFLAIKLLNLQHTIDLVLPDCD*
Ga0153697_137231	F048001	GAG	MKDKTEIQYLKNEIKQLKADMANLLMVLIDMKVLKITKDENGNLVYDTGKKSE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.