NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1519

Scaffold Ga0153697_1519


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1519 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11280
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F017972Metagenome237Y
F038999Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0153697_151914F003212GAGGMKDKWLVTLEIDTYDGDPRKWDWDYIFTGEDDVKAISSEFKGRVLPTSEGESNE*
Ga0153697_151915F000821GGAGMNEEYLKAKFDLCINQAEKDLQAQDIARAIKNLQRANSAMSRLFGLESEDESE*
Ga0153697_151916F001477N/AMAVGMGGTTMSKEFITKAHYPDSNIYTIHPPKSELILFYEVVEKDGDNTWGGANAEQAIQWLVNSPSGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL*
Ga0153697_151917F003863GGAGGMESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVISSNSRLTVGIHTRANNTPAIADPGDAGADEGNNGGEA*
Ga0153697_151918F017972GGAGGVKTKHLQLVTSKHSVTTHIRESVRSYYGPVSPGSTTLLAQETLRVNQLAQLSELLSSLESVVESLNYKSFTLYDTLNTAIEAVSVALNDTQIESVGTKDC*
Ga0153697_15196F038999GGAGMTTTQNETAKLSFPCSCNGCRNYPTRPGEVWHESQIASKAQGYFFTPETMRFFKSRIADFKPVGISPSGVASLMVIVSNKRDDDPRYYEIVTLCPYGELAREWAKDSDGSPITSYESLSKARKSARWNCSIAAQICDCHGCQLDRAGR*

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