Basic Information | |
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Taxon OID | 3300011334 Open in IMG/M |
Scaffold ID | Ga0153697_1519 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 11280 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (80.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Daesunglee, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.6746111 | Long. (o) | 127.3841278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000821 | Metagenome / Metatranscriptome | 876 | Y |
F001477 | Metagenome / Metatranscriptome | 687 | Y |
F003212 | Metagenome / Metatranscriptome | 500 | Y |
F003863 | Metagenome | 464 | Y |
F017972 | Metagenome | 237 | Y |
F038999 | Metagenome | 164 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153697_151914 | F003212 | GAGG | MKDKWLVTLEIDTYDGDPRKWDWDYIFTGEDDVKAISSEFKGRVLPTSEGESNE* |
Ga0153697_151915 | F000821 | GGAG | MNEEYLKAKFDLCINQAEKDLQAQDIARAIKNLQRANSAMSRLFGLESEDESE* |
Ga0153697_151916 | F001477 | N/A | MAVGMGGTTMSKEFITKAHYPDSNIYTIHPPKSELILFYEVVEKDGDNTWGGANAEQAIQWLVNSPSGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL* |
Ga0153697_151917 | F003863 | GGAGG | MESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVISSNSRLTVGIHTRANNTPAIADPGDAGADEGNNGGEA* |
Ga0153697_151918 | F017972 | GGAGG | VKTKHLQLVTSKHSVTTHIRESVRSYYGPVSPGSTTLLAQETLRVNQLAQLSELLSSLESVVESLNYKSFTLYDTLNTAIEAVSVALNDTQIESVGTKDC* |
Ga0153697_15196 | F038999 | GGAG | MTTTQNETAKLSFPCSCNGCRNYPTRPGEVWHESQIASKAQGYFFTPETMRFFKSRIADFKPVGISPSGVASLMVIVSNKRDDDPRYYEIVTLCPYGELAREWAKDSDGSPITSYESLSKARKSARWNCSIAAQICDCHGCQLDRAGR* |
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