NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1525

Scaffold Ga0153697_1525


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1525 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11207
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015448Metagenome254Y
F019101Metagenome231N

Sequences

Protein IDFamilyRBSSequence
Ga0153697_15253F015448GGTGGVALCVIVATTSIAYIETLYMKAQLKQEIRELRKLKKELKESK*
Ga0153697_15254F019101AGGMLHEGRLQLEGAKSTIQGVQADLKAIKGLWEWLVGLFVSKSDKITEPVAKAKALKKDQSYESIELQVINDVGIQLGNFFEIQAQLKNYYASLEAESKERYDPTQNTSKKAIERSLIELQMESLDATIREQMTIYAPAELKAIYTRFLKMYAKIQQEQEWARAEEVKKMRLLRWQKEQEEIRAIELTSGVIAVVFVSLLFGWLMWQLRVLSGGF*
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