NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153697_1601

Scaffold Ga0153697_1601


Overview

Basic Information
Taxon OID3300011334 Open in IMG/M
Scaffold IDGa0153697_1601 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10130
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameDaesunglee, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6746111Long. (o)127.3841278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049633Metagenome / Metatranscriptome146Y
F051131Metagenome / Metatranscriptome144N
F073556Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0153697_16015F051131AGGAMNRAFIYSYKTFVSFATYEDVTNRDSRVFEANEDLTESEINNYLEQASQRILTQIRNTEWWREYQRRMAQIINPNLLPAVNPDYILARTQEFIDLNVYFALFEYVYPSVADFGNPDSAEFAKIKFYKDSYNLLFDEIIEAGDWYDFSENGTIDTADKMASVVNRVRVR*
Ga0153697_16016F049633GAGMRTELLTYLTAQLTESIKTSQELPFQEGTNPLYMKNARRVYLDEPYTEEEDLLPTLGSLIINQRVTIVRWFLTVDAKNRNTDLDSALTILGSAKDITTITGVYKRLFDYTVSIDNDRVVYEGEYRFYNLA*
Ga0153697_16018F073556AGGAGMIFDNKTNNEIFRSIEAEVAKALAELRCAKRDLEQAEVRMKFALATVHYLKQRYEDMK*
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