Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1081 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1081 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	38812
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (84.06%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

38812

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (84.06%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F009953	Metagenome / Metatranscriptome	310	Y
F014358	Metagenome	263	Y
F034467	Metagenome	174	Y
F038590	Metagenome / Metatranscriptome	165	Y
F053072	Metagenome	141	Y
F070994	Metagenome	122	Y
F075680	Metagenome	118	Y
F080867	Metagenome	114	N
F085600	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_108122	F085600	AGGAG	MMQTDVKGVTCPVSTDTTAYTGRTRFKGLWYSATGATTIVIKDGSTTLFTFTIGAAGMSSIWIPGEGVVCSTSLVVSVGATCAAVAFYG*
Ga0153698_108129	F009953	AGGAG	LNDYKLLAHVAKEVEKLKEEQAFHLANGRAADIEEYRSICGVIRGLNLAENIINDLVQKMEKSDD*
Ga0153698_108137	F014358	AGGAGG	MLGTDWKECIDCREEIHVSRYQAFCKFCEQDRERSAGEERTSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG*
Ga0153698_108138	F038590	GAGG	MTTRPRHVKVDRLSRPIRQTDYLQMLGEAMKFARVEESKPVLNARELPIQTKREVK*
Ga0153698_108145	F070994	GAG	MLGLNGMTATDFKRYIVRWVIDHIKNESGTAQIQVLGYCVYDTKECKTLFEHKDKQVCEKVLQMVLEGVDHGIQK*
Ga0153698_108146	F075680	AGGAG	MGYRSDVVAVFYTQDPNEFPSIKLFIDENIPEWCRGDEYMSTFVGNHDIRGIKFTMSDVKWYPSYPDVKGFEDAIDKFEKLSDGGDKWMWEFVRIGEETQDVEERWGDHSHNLLHVSRTIESDV*
Ga0153698_108148	F053072	N/A	LSRIKLWWFITNVRRYQMVVVDIGYRKLVMTKEKAMALVECLESADVYEEKWWSDDVRKEKGMDSTYTYHVYPNEAHFSMRIVSDSHFQMARLAGKPQEK*
Ga0153698_108150	F080867	AGGA	MDMSMNTLSLSNVVVGEDLQKSMDKEGLKLSGVYGMLDPVISRLASLNPLWTFVINSSTHSMGSSRVASGFMVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPSERISKAKDAAERVVSRAHWNKERERTQHQANVKNEMLVWAETKGHAMFLEYLKAEAIPSLKHKVTTSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDLGKYLVKIGDNVELYDDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVTHEIFVLLVDELTNVSEGV*
Ga0153698_108151	F034467	AGGAG	MKEEIRYSSKAIPLRGCNHPKFKWIDAAHTDIRRTFRKARLLIRITKGAAYESRT*
Ga0153698_108154	F006110	AGGA	MPRPKPPEKLIGRQVRMSDRHWLILQQLGGAQWLRELLDKKAPMPKKYYEGLINDNRN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1081

Overview

Ecosystem & Geography

Associated Families

Sequences