Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1108 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1108 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	35499
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (21.43%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

35499

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (21.43%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F011227	Metagenome / Metatranscriptome	293	Y
F043829	Metagenome	155	Y
F047481	Metagenome / Metatranscriptome	149	Y
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F091307	Metagenome	107	N
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110816	F043829	N/A	MNQLPKWGDLNTYERHKLLGELIDSMIYSGEALHHLKVTVEKFRAMGWVRSVIMPDIETES*
Ga0153698_110818	F091307	N/A	MKKQVTTNVRIPAEWLKSSIADIMIMVTATINHTEDMVDVCVREILFPGYHGINIESQYHSNFYELVEQKCMDAYTFKMDSHYDNEYYADYVL*
Ga0153698_110819	F093533	N/A	MYYDRIEMTLEVRGEVRATAFPLRNHESIERQRHQWYYFYGLKTIKGWEIYITQKSMMQNSMPFRIEKSFPYLIKSQEHESTESESTDINCEPTDTSGGLEQVVGKRQG*
Ga0153698_110828	F052371	GAG	LTNSEELDLEKFKLSRTSEPIKNLSSGLVIDELLNGMQKLGVKGDKMPNNADLLIMYKSIMEEYPNIKIGEISLGFDLASKGKLDIDAETYQNFSMLYLHRILRAFARYGMQKLNEIKPVTENNWQPRFITDDEKIETAFDCFKKFRQWDNIVFGVDVFNILHKRGNIIVTASETYEKVLTAMNEKMFEGSRQDKIDVKNKMKDDDYMEHQCYRMAVSEYFTKLINRG*
Ga0153698_110834	F051129	N/A	MTQEDEKFIQDNIYNFECVKVGFMKNLPLHILVGYEQIYRRYLDSGFILTSWCSNCVADMMKRLSNYWDSYQANKSVEQPIQQAPKKKGRPFKNKQ*
Ga0153698_11087	F011226	N/A	MAKQISPVTLWVNGESKEAKYLQVTCINDNYENSATNYWQMFNMNVDAEGVESMGEQVACGNTTINGADYIAWGDQPAMAINAWIYNWVADKLNLVILP*
Ga0153698_11088	F011227	N/A	MDLISLKAQAYDILSNLEYFQKQLQEVNQKIAEELQKEKEENG*
Ga0153698_11089	F047481	N/A	MDSKSIGMCIATILIKVWADIALSEVGVVVAILAGISTIIYNVYRLVKEIKS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1108

Overview

Ecosystem & Geography

Associated Families

Sequences